Professional Stem cell Organizations, Networks and Consortia
- Cancer Stem Cell Consortium (CSCC)
- European Stem Cell Network
- Life Sciences Network Search Nature
- NSW Stem Cell Network
- Research Experience of Stem Cells in EUropean Society
- Stem Cell Action Network
- The Stem Cell Research Network (Invitrogen)
Databases for Worldwide Tumor Banks
- AndalusianRegional Tumour Bank
- Australian ProstateCancer Tissue Bank
- Australia
Breast CancerTissue Bank
- ArizonaCancer Center Tumor Bank
- AIDS& Cancer Specimen Resource
- BritishColumbia
Breast Cancer Tumour Bank
- BritishColumbia Tumour Tissue Repository
- CanadianTumour Repository Network
- Children’sCancer and Leukaemia Tissue
Bank
- Cancer Center Tissue Bank- Fudan University
- CancerTissue Bank Research Centre
- Confederationof Cancer Biobanks
- Duke Cancer Tissue Bank
- EuropeanCancer Biobank
- EuropeanSarcoma & Tumour Bank
- FoxChase Tumor Bank
- Greenville
HospitalSystem Cancer Biorepository
- GeorgiaRegents University Tumor Bank
- IranNational Tumor Bank
- Inflammatory
BreastCancer Biobank
- LudwigBoltzman Tumour Bank
- LawsonBrain Tumour Tissue Bank
- LomaLinda University Cancer Center Biospecimen Laboratory
- ManitobaBreast Tumour Bank
- MD Anderson Gynecologic CancerTissue Bank
- National Cancer InstituteBiorepositories
- NeuroendocrineTumors Biobank
- OntarioTumour Bank
- OchsnerTumor Tissue Bank
- QueenslandChildren’s Tumour Bank
- PROCUREQuebec Prostate Cancer Biobank
- Saint-LucTumour Bank
- SpanishNational Tumour Bank Network
- SouthwestFrance Tumour Bank
- SouthamptonTumour Bank
- SunnybrookTumour Bank
- SouthTexas Tumor Bank
- TumorBank Bern
- TumourBank of Provence
- Universityof Massachussets Cancer Tissue Bank
- University of MichiganHuman Breast Cancer Cell Lines
- UCSFBrain Tumor Tissue Bank
- Victorian Cancer CareBiobank
- WestmeadPaediatric Tumour Bank
- WalesCancer Bank
- AndalusianRegional Tumour Bank
- A Complete Lists of Short-term Training Courses in Both Human Embryonic as well as Adult Stem Cells. Site maintaining by ISSCR
- Cancer Stem Cell News (blog from the Cancer Stem Cell Consortium (CSCC)
- Nature Posters (cancer pathways, stem cell fate, etc)
- NIH Stem Cell Information
- Stem Cell Database
- Reports on Stem Cells -Nature
A) Cancer Genomics: Databases, Tools to handling data and Consortium:
- BroadGDAC Firehose
- Berkeley Morphometric Visualization and Quantification from H&E sections
- Cancer Imaging Archive (TCIA)
- Cancer Genome Workbench (CGWB)
- Cancer Genome Anatomy Project (CGAP)
- Cancer GEnome Mine
- CancerGEM KB(CancerGenomic Evidence-based Medicine Knowledge Base)
- Cancer Genome Atlas (TCGA) Data Portal
- Data AccessCompliance Office (DACO): Handles requests from scientists
- FunSeq: Tool for Identification of Candidate Drivers in Tumor Genomes
- Genomics of Drug Sensitivity in Cancer
- Integrative Genomics Viewer (IGV)
- ICGC Data Portal
- Regulome Explorer Tools
- Roche Cancer Genome DatabaseMutome
- Software for De novo discovery of mutated driver pathways
- UCSC Cancer Genomics Browser
II) Visualizing cancer genomics data:
- cBio Cancer Genomics Portal
- Cancer Genome Workbench (CGWB)
- Cytoscape
- Caleydo StratomeX
- Circos
- CircleMap
- caArray
- Gitools
- Genomica
- GeneExpression Omnibus (GEO)
- IntOGen
- Integrative Genomics Viewer (IGV)
- NAViGaTOR
- Oncomine
- Regulome Explorer
- Savant Genome Browser
- Tumorscape
B) Cancer Cell General
- Apoptosis
- Cancer Cell Line Project (Sanger)
- Cancer Images Database (NCI )
- Developmental Therapeutics Program (NCI/NIH)
- Leukemia and Lymphoma Society World's Largest Organization
Ancient and Alternative Medicine Database:
i)General:
i)General:
- Chinese Medicine Database
- Complementary and AlternativeTherapies (basic guide)
- Dietary Supplement Factsheets
- FDA Poisonous Plant Database
- FakeCancer Cures (from FDA)
- Herbal medicine
- Licensed Natural Health Products Database (Canada)
- Medicine Plus
- NAPRALERT (Database of all natural products)
- Native American Ethnobotany
- Naturally Occurring Plant-based Anti-cancerCompound-Activity-Target database (NPACT)
- TCMID (Traditional Chinese Medicine Integrative Database)for herb molecular mechanism analysis
- American Nutraceutical Association
- British Columbia Functional Food and NutraceuticalNetwork
- European Nutraceutical Association ENA
- Nutra India Summit
- ISNFF The International Society for Nutraceuticals and Functional Foods
- Dutch Nutraceutical Association
- Macau Nutraceutical Association
General:
- Computer Access to Research on DietarySupplements (CARDS) Database
- Cyberbotanica:plants and cancer treatment
- Dietary Supplement Ingredient Database (DSID)
- Plant extract database
- Rain-tree Plants
- Plant Extracts
- Biologic nutrigenomics
- GMO Compass
- Complementary and Alternative Therapies
- Prediction Tools
- International foodcomposition table/database directory
- USDA NationalNutrient Database for Standard Reference
- IngredientDictionary
- Genome Variation Alles Frequencies Worldwide (FINDbase)
- Diseases Database
- Diseases and Stem Cells
- Rare-cancer
- Specialized Search Engine For Rare Diseases
- Apoptosis Regulators
- Alliance for Cellular Signaling
- Biocarta Signalling-pathway maps with extensive database links
- Biomolecular Object Network Databank Molecular complexes and pathways
- Cytokines Online Pathfinder Encyclopedia
- CellDesigner
- Cell Signaling Resources 1
- Cell Signaling Resources 2
- Collection of Pathway Maps (KEGG)
- ConsensusPathDB: functional interaction networks
- GeneAssist Pathway Atlas
- Genemania Find new members of a pathway or complex
- Nuclear Receptor Resource
- NetSlim: high-confidence curated signaling maps One –Stop Guide for Pathway Analysis
- Pathway Interaction Database
- Pathway Central
- PANTHER Pathway
- Pathway Hunter Tool
- ResNet Databases
- ResponseNet Understanding of the underlying cellular response
- Signal Transduction Knowledge Environment
- Signaling Interactive Pathways
- Signal Transduction Resources
- UCSD-Nature Signaling Gateway
Kinase Resources
- AtTome: Genome Express Database
- Biological DataBase of Protein Loops
- Binding Database
- CDKN2A Database
- Cell Migration Knowledgebase (CMK)
- Database of Receptor Tyrosine Kinase
- Genomics, Evolution and Function of Protein Kinases
- Database of S/T/Y Phosphorylation Site
- Group-based Phosphorylation Scoring Method
- Kinase Sequence Database
- Kinase database - Functional Domains of Each Gene Product
- Kinase Substrate Database
- Kinbase
- Kinase Interactome and Phospho-Protein Database
- KinMutBase
- Kinase Classification
- MoKCadatabase—mutations of kinases in Cancer
- Protein Kinase C
- Kinase-Disease Associations
- Protein Kinase Resource
- Protein Information Resources
- Protein Family Sites and Resources
- Path Case: Pathways Database System
- Receptor Tyrosine Kinase (RTK) Networks Consortium
- Scansite Predicts Phosphorylation Sites and Specific Domain-Binding Regions
- Targeting the Kinome
Inhibitors
Epigenetics Resources
Chromatin Databases:
DNA Methylation Databases :
- CpGPlot:
- CpG Viewer:
- CpG Island Searcher:
- CpG and GC Plotter:
- CpGfinder:
- CpG Promoter:
- EpiGRAPH:
- MethyCancer Database:
- MethDB:
- MethPrimerDB:
- MethPrimer:
- PubMeth Database:
- RegTransBase:
- StatEpigen database:
- Epigenome :
- Epigenetics Station:
- Human Epigenome Project (HEP)
- International Human Epigenome Consortium
- Swedish Network for Epigenetics
- Multidimensional Human Embryo Eukaryotic Development
- Science Collections on Epigenomics
- Bioinformatics for Glycan Expression
- Functional Glycomics Gateway
- Glycoforum
- Glycosciences
- Glypeps
- Human Disease Glycomics/Proteome Initiative (HGPI)
- GlycomeDB - A Carbohydrate Structure Metadatabase
- Integrated Technology Resource for Biomedical Glycomics
- National Center for Glycomics and Glycoproteomics
- Omics Gateway- Glycomics
- Technology at Glycomics
Glycomics Initiatives:
- Alliance of Glycobiologists for Detection of Cancer and Cancer Risk (USA)
- Consortium for Functional Glycomics (CFG) (USA)
- UK Glycoarrays Consortium
- HUBO
Glycan tools:
- GlycoMod Glycan
- Glycofragment Masses
- GlycoPep DB carbohydrate database
- Carbohydrate 3D Structure Predictor
- Tool for 2D glycan structure Drawings
- KEGG GLYCAN
- Glycogene database
- Glycosyltransferases
- glyco-epitopes
- GlycomeDB - A carbohydrate structure metadatabase
- ComprehensiveMonosaccharide Database
- CAZy (Carbohydrate-Active Enzymes)
- CarbBank - Database of sugarmoieties in glycoproteins.
- Glycan Structures Database
- Glycan Binding ProteinMolecule Pages
- Glycan Profiling
- Glycosylation Pathways
- XylogluccanOligosaccharide Database
- SUGABASE Glycomics portal
- Alternative Splicing Database (ASD)
- Automated Splice Site Analyses
- Breast Cancer Gene Database (BIC)
- Broad Integrative Genomics Portal
- BioProfiling Analyses and interpretation of biological data
- Ccancer (an automatically collected database of gene lists)
- Collection of 3D structure database for over 40,000 cancer drugs
- Cadherins Resources
- Cancer Genome Project
- Cancer Gene Data Curation Project
- c-Myc Database
- Cancer Gene Expression Database (CGED)
- Cancer GEnome Mine
- Cancer Gene Census
- Connectivity Map
- Comparative Toxicogenomics Database (CTD)
- COSMICMart (COSMIC BioMart) : mineand combine somatic mutations with other data sets
- COLT-Cancer:essential genes in human cancer cell lines
- Database For Cancer Gene Mutations
- Database of Leukemia Genes (LeGenD)
- GeneNetwork
- GenePattern
- Gene Set Enrichment Analysis (GSEA)
- Embryonic Stem Cell Transcriptomes
- Expressed Gene Anatomy Database
- EGFR Mutation Database
- Functional Annotation of the Mammalian Genome
- Human Genome Database
- Genotype-To-Phenotype (G2P) database (GEN2PHEN)
- Gene Seeker
- Gene Quantification
- GenBank
- GETPrime: a gene- ortranscript-specific primer database for quantitative real-time PCR
- GermOnline 4.0: genomics gatewayfor germline development, meiosis and the mitotic cell cycle
- GEne Network GEnerator
- Giving Unique and Meaningful Names to Every Human Gene
- GeneCards Sources
- Genome Medicine Database of Japan (GeMDBJ)
- Gene Expression Data Portal (GEDP)
- HUGENET
- Human Gene Sorter UCSC
- Human Genome Variation Database of Genotype-to-Phenotype (HGVbaseG2P)
- Human Gene Mutation Database
- Human Genes and Diseases Database
- Human Genome Structural Variation
- Koyoto Encyclopedia of Genes and Genomes
- International Nucleotide Sequence Database Collaboration
- International Cancer Genome Consortium Data Portal
- IntOGen (IntegrativeOncoGenomics): data for identification of genes in cancer development
- KEGG Mutation Databases
- Knowledgebase For Fusion Sequences
- Mitomap: Human Mitochondrial Genome Database
- Molecular Signatures Database (MSigDB)
- MYC Gene Database
- NAR Database
- NetGene2 Prediction of splice sites
- NCG3.0:Network of Cancer Genes
- Oncomine Research Platform
- Oral Cancer Gene Database
- Open REGulatory ANNOtation database (ORegAnno)
- Pancreatic Cancer Gene Database (PC-GDB)
- p53 Database
- ProDom
- Roche Cancer Genome Database (RCGDB)
- RNAi Gateway
- TargetFinder (similar expression pattern to a group of user-selected genes)
- The RNA World Website
- RNA Modification Database
- Repository of Three-Dimensional Structural Information - Nucleic Acids
- Retrovirus Tagged Cancer Gene Database (RTCGD)
- SiteSeer
- Stanford Genomic Resources
- Stem Cell Genomics Database
- Stanford Microarray Database
- Structural Genomics Consortium
- Sequence Retrieval System
- TP53 Mutation Database
- Trsdb A Proteome Database of Transcription Factors
- Tumor Gene Family of Databases
- UniGene: View of the Transcriptome
- UNC-Chapel Hill Microarray Database Curators
- Wnt Resources
A) Cell lines:
Stem cell lines database
- StemDB
- StemBANCC (for high quality human induced pluripotent stem (iPS) cell lines)
- Pluritest - assay for pluripotency in human cells
- International Stem Cell Registry
Cancer cell lines database
- Broad-Norvartis Cancer Cell Line Encyclopedia (CCLE)
- Breast cancer cell lines
- Coriell Cell Repositories
- Cell Line DataBase (CLDB)
- Cell Line Integrated Molecular Authentication database (CLIMA)
- CellLineNavigator database
- Commonly used cell lines in cancer research
- CellMiner
- European database collecting the informationof frozen tumor tissue specimens
- European Collection of Cell Cultures (ECACC),
- European Searchable Tumour line Database(ESTDAB)
- German biobank registry
- German Collection of Microorganisms and CellCultures
- Genomics of Drug Sensitivity in Cancer database (GDSC)
- Human Tumor CellLine Screen
- HEK293 Cell Database
- International Gene Trap Consortium (IGTC)
- Interlab Cell Line Collection (ICLC)
- IGRhCellID: integrated genomic resources of human cell lines for identification
- Life Technologies Corporation Cell Line Database
- Prostate Cancer Cell Lines Database
- Searchable Database of Short-Tandem Repeat GenotpyingData for Cell-Lines
- Sanger COSMIC Cell LineProject
Whole cell database:
- CellBase: retrieving biologicalinformation fromheterogeneous sources
- CCDB Cell Centered Database: for high resolution 2D, 3Dand 4D data from microscopy imaging
- HMDB: Human Metabolome Database
- TissueNet: human tissue protein–protein interactions
- WholeCellKB:for comprehensive whole-cell models
Human genes and expression:
- Composite regulatory elements
- TRED: The Regulatory Element Database
- TESS: Transcription Element Search System
- TFClass: classification ofhuman transcription factors
- Annotated regulatory Binding Sites (ABS)
- Animal Transcription Factor Database (AnimalTFDB)
- Cis-regulatory element database (cis RED)
- DNA-Protein Interactions Database (DPInteract)
- Evolutionary conserved region database (ECRbase)
- Factorbook: transcription factor-binding data (ENCODE consortium)
- Mammalian Promoter Database (MPromDb)
- Gateway (pSTIING)
- Validatedleucine-rich nuclear export signals (ValidNESs)
Database of miRNA
- ARGONAUTE2
- Cancer miRNA prioritization
- miRBase
- miRò: a miRNA knowledge base
- miRNAMap
- miRNApath
- miRGen
- miRex
- 2-D PAGE Databases
- Atlas of Transcriptomics and Proteomics in Human Liver
- Atlas Antibody
- Biological Macromolecular Structure
- CancerResource:cancer-relevant proteins and compound interactions Compendium of Targeted Proteomics Assays
- Curated Resource of Core Pathways and Reactions in Human Biology
- Database of Protein Disorder
- Database of Proteomics Measurements Under the Influence of miRNAs
- dbDEPC: Differentially Expressed Proteins in humanCancers
- Encyclopedia of Life (EOL) Complete Proteome of Every Living Species
- ExPASy (Expert Protein Analysis System)
- Global Proteome Machine Database
- General Repository of Interaction Datasets(BioGRID)
- Human Protein Reference Database
- Human Cancer Proteome Variation Database
- Human Protein Expression and Localization in a Large Variety of Normal
- Liver Proteome
- Localization and Expression of Proteins(LIFEdb)
- NoPdb: Nucleolar Proteome Database
- Molecular INTeraction database
- Protein Atlas
- PRoteomics IDEntifications Database PRIDE
- Proteome Players and Resource Links
- Proteomics Research Resources for Integrated Biology
- Protemoics Resources –HSLS
- Proteome Database of Cultured Human Cells
- Structural Classification of Proteins
- Sciencemag Proteomics Resources
- Atlas of Side Chain Interactions
- AceDB Genome Database
- Bioinformatics and Genomics Resources
- Biological software
- Bioinformatics Tools
- Bioinformatics World
- Computational Cancer Genomics
- Cytoscape
- Genes-to-Systems Breast Cancer (G2SBC) Database
- IMGT International ImMunoGeneTics information System
- Molecular Docking,Drug Design & Computational Chemistry Great Site!
- NIH Center for Molecular Modelling
- Systems Biology Markup Language (SBML) Biochemical Reaction Networks
- System Biology Worldwide
- Tools for the Molecular Biology One-Stop Wonder!
- Norwegian NanoMedicine Network (amazing links!)
- Australasian Society for Biomaterials and Tissue Engineering
- Biomedical Engineering Society
- Biomedical Engineering Network
- British Society for Matrix Biology
- European Tissue Repair Society
- German Society for Regenerative Medicine
- Japanese Society For Regenerative Medicine
- London Regenerative Medicine Network
- Multi-Agency Tissue Engineering Science (MATES)
- National Center for Regenerative Medicine
- Organizations and International Tissue Engineering Projects
- Resources For Tissue Engineering
- Society for Tissue Engineering and Regenerative Medicine India
- San Diego Consortium for Regenerative Medicine (SDCRM)
- Tissue and Cell Engineering Society
- Tissue Viability Society
- Tissue Engineering International and Regenerative Medicine Society
- UK Society for Biomaterials
- Who's Who in the world of Regenerative Medicine
Model Organisms
- Caenorhabditis elegans WWW Server Papers, Meetings, Researchers, etc
Drosophila melanogaster (fruit fly)
- FlyBase Database of Sequence Data from the Drosophila Genome
- High-throughput Analysis - Datas from Drosophila cell culture
- Interactive Fly Genetic Glossary of Fruit Fly Biochemical Pathways and Organs
- Farm Animal Genomics Public Repositories for Genome Mapping Data
- Xenbase
- Model Organism Parameciumtetraurelia
C) General Platforms
Life Sciences Directory
- European Network of Breast Development and Cancer Labs
- Biochem4schools
- ExPASy Life Science Directory
Discussion Forums
- Automated Literature Search Tool
- Alternative interface to the PubMed
- Expert Essays: find in-depth, explanatory information relating to citation databases
- Master Journal List: search the master database of all the journal titles
- ResearcherID: find collaborators, review publication lists
Grants and Scholarships
- Scientific Associations (an additional place to find scientific happenings..!)
- Educational Outreach
- FreeRepair Help
- Free e-book On Regenerative Biology
- Free e-book - Biology of Cancer by Prof. Robert Weinberg
- Free On-line Biomedical Books From NCBI
- Free Book - On-line - Tissue Engineering
- Free Medical Literature Guide
- Healthcare Books from Merck
- Online Continuing Medical Education
- On-line Microarray Courses
- Madame Curie Bioscience Database
- Bioentrepreneur (Nature Biotechnology)
- Principles of Biology
- Search Free Books PDF Files
- The Merck Manual Go-To HomeGuide for Symptoms
- Cells Alive
- Citizendium
- Cell Biology and Astronomy Competition
- Free and Tailored MicroRNA Seminar at Your Venue
- Cheap Hostels, Hotels, Flight Tickets
- Do It Yourself Scholar
- Funny Subjects Real Articles from Pubmed
- Global Medicine Network
- Giving Pledge
- Highlycited:Most highly influential scientists and scholars worldwide
- Labroots
- Molecular Gastronomy and the Science of Cooking
- Personality Test
- Resources To Help You Write Your Papers
- R&D Challenges
- ResearchGATE
- ResearchNet
- Science Songs Net
- Science Business
- Scientific Peer Review, ca. 1945
- Time Zone Converter
- Trade secretes: a nature network blog by bioentrepreneur
- World History Articles and Pictures
- Web Toolbox
- WiLS Database - Expert Women in Life Sciences
Application of Cancer and Stem cell Resources
a) SNP and Genome Variation:
- Coriell Personalized Medicine Collaborative
- European Society of Pharmacogenomics and Theranostics
- Gorgetown Database of Cancer for Personalized Medicine (G-DOC)
- European Association for Predictive, Preventive and Personalised Medicine
- Personalized Medicine Coalition
- Worldwide Innovative Networking in Personalized Cancer Medicine
- Cancer Stem Cell Research Database (Maven Semantic)
- Chemonaut (lead-like screening compounds and building blocks)
a) SNP and Genome Variation:
- Catalogue of Structural Variation in the Human Genome
- CaSNP (interrogating copy number alterations of cancer genome from SNP array data)
- Candidate causal SNPs and their causal pathways
- Functional SNP (F-SNP)
- Mutalyzer 2.0 β-5 (to support checks of sequence variant nomenclature based on HGVS)
- PolyPhen-2 (predicts possible impact of an amino acid substitution on the structure and function of a human protein)
- PolyPhen Polymorphism Phenotyping
- PupaSuite ( tool that allows for the selection of relevant SNPs within a gene)
- SNP on NCBI
- SNPs3D
- SNPnexus Database
- SNP Structural Modelling Tool
- SNP effect (Molecular phenotyping of human SNPs and disease mutations)
- SNP in Regulatory Gene Regions
- SNAP (tools for designing sequence primers and evaluating RNA splicing effects)
- SNP2PROT(to map human DNA variation onto proteins)
- Variants GPS (Genotyping Data and Analysis, result from next generation sequencing)
- ALlele FREquency Database
- Atlas of Genetics and Cytogenetics in Oncology and Haematology
- CGAP Genetic Annotation Initiative (GAI)
- European Directory of DNA diagnostic Laboratories (EDDNAL)
- Genetic Association Database
- Genome Wide Association Database (GWAS DB)
- GeneCards
- HGBASE (Human Genic Bi-Allelic Sequences)
- Human Gene Mutation Database (HGMD)
- International HapMap Project
- Immuno Polymorphism Database (IPD)
- Mutation Discovery Database
- Mammalian Gene Mutation Database (MGMD) (database of published mutagen-induced gene mutations in mammalian tissues)
- Universal Mutation Database
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