New Entry for 1st August 2022 to 31st October 2022

A): BRAIN TUMOR / NEURO CANCER CONSORTIUMS, ASSOCIATIONS, FOUNDATIONS, SOCIETIES

CONSORTIUMS

• Adult BrainTumour Consortium
• Brain Tumor Epidemiology Consortium
• Canadian Brain Tumour Consortium
• Comparative Brain Tumor Consortium
• Children’sBrain Tumor Tissue Consortium
• Children'sBrain Tumour Drug Delivery Consortium
• Neuro-Oncology Consortium
• Pacific Pediatric Neuro-Oncology Consortium
• PediatricBrain Tumor Consortium
• RareBrain Tumor Consortium 
• Stanford Brain Metastases Consortium

FOUNDATIONS

• Brain Tumour Foundation of India
• Brain Tumor Foundation of Canada
• ChildhoodBrain Tumor Foundation
• Children's Brain Tumor Foundation
• Neuroendocrine Tumors Research Foundation
• Oklahoma Brain Tumor Foundation
• Pediatric Brain Tumor Foundation of the United States
• Pediatric Low Grade Astrocytoma Foundation
• Pediatric Brain Tumor Foundation
• Southeastern Brain Tumor Foundation

ASSOCIATIONS

• American Brain Tumor Association
• EuropeanAssociation of Neuro-Oncology
• Florida Brain Tumor Association
• Pituitary Network Association

SOCIETIES

• AsianSociety for Neuro-Oncology (ASNO) 
• American Society of Clinical Oncology (ASCO)
• Society of Austrian NeuroOncology (SANO)
• AmericanSociety of Neuroradiology (ASNR)
• BelgianAssociation for Neuro-Oncology (BANO)
• British Neuro-Oncology Society (BNOS) 
•  Chinese Society of Neuro-oncology (CSNO)
• Egyptian Group of Neuro Oncology (EGNO) 
•  Epidermoid Brain Tumor Society
• France Association des Neuro-Oncologues d'Expression Francaise (ANOCEF) 
• Neurooncology Working Group of the German Cancer Society (NOA) 
• Indian Society of Neuro-Oncology (ISNO) 
• Italian Association of Neuro-Oncology (AINO) 
• Japan Society for Neuro-Oncology (JSN) 
• Korean Society for Neuro-Oncology (KSNO) 
• Society for Neuro-Oncology Latin America (SNOLA) 
• Dutch Society for Neuro-Oncology (LWNO) 
• National Brain Tumor Society
• Spain Grupo Español de Investigación en Neurooncología (GEINO) 
• Society forNeuro-Oncology
• Swiss Group for Clinical Cancer Research, Working Group for Brain Tumours (SAKK) 
• Turkey Noroonkoloji Dernegi (TNOD) 

ADDITIONAL RESOURCES

• Brain TumorTissue Repository (BTTR)
• Brain Tumor Network
• CentralBrain Tumor Registry of the United States
• EORTC BrainTumor Group (BTG)
• International Brain Tumour Alliance (IBTA)

B):

BRAIN TUMOUR DATABASES

• WHO Guidelines update 2016
• Allen Brain Atlases and Data
• BITE: BrainImages of Tumors for Evaluation database
• Brain Datasets for Human
• Brain TumorDatabase
• BraTumIA(Brain Tumor Image Analysis)
• Brain Cancer Cell Panels
• DrugsApproved for Brain Tumors
• Global Cancer Observatory (GCO)
• GLOBOCAN database
• ITK-SNAP Image Data Downloads
• Intogen
• Mouse Tumor Biology (MTB) Database
• PATIENT-DERIVED XENOGRAFT (PDX) MODELS
• p53MUTATIONS IN BRAIN CANCER
• WHOLE BRAIN ATLAS

C): 

BRAIN TUMOR / NEURO CANCER DATABASES SERIES  PART- 1:

GLIOMA  DATABASES

• BioModels Database- Glioma
•  Chinese Glioma Genome Atlas database
• Diffuse Low-grade Glioma Database
• GLIOMASdb - A database for human gliomas on RNA-Seq
• Glioma proteome
• Glioma Genomics Analysis and Visualization Platform

 GLIOBLASTOMA DATABASES

•  BioGPS GBM datasets
• BioModels Database – Glioblastoma
• Cancer Genome Atlas Glioblastoma Multiforme(TCGA-GBM) data
• Glioblastoma Clinical Trials (US) 
• Glioblastoma multiforme Clinical Trials
• Glioblastoma Atlas Project
• Glioblastoma Cell Culture (HGCC) Resource
• Glioblastoma Multiforme (TCGA, Provisional)
• Glioblastoma Bio Discovery Portal
• Rare Disease Database
• REMBRANDT - REpository for Molecular BRAin Neoplasia DaTa
• TCGA Data Portal

D): 

BEAUTIFUL LIFE SCIENCES  WALLCHARTS / POSTERS

• · American Cancer Society 
• ·  Abcam Pathway Poster Library 
• · Angiogenesis Foundation Wall Charts and Posters
• · Abnova Corporation Poster
• · Adipogen Wallcharts
• · Biolegend Posters & Literature
• · Biocat
• · BioVision
• · CaymanChemical
• · Cell Signal  Posters
• · Caltagmedsystems Posters 
• · EnzoLife Sciences
• · Human Genome Project
• · Irvinesci 
• · Miltenyibiotec Small Molecules 
• · Miltenyibiotec Flow-Cytometry
• · MBL International
• · Sigma Aldrich
• · STEMCELL Technologies
• · Scilabware 
• · Sabiosciences
• · Sapphirebioscience
• · Tocris

E): CONFERENCE RESOURCES FOR PERSONALIZED CANCER MEDICINE:

• New Dates for Conferences, Meetings and Conventions Postponed Due to COVID-19. Update is on its way!

* (A)

Professional Stem cell Organizations, Networks and Consortia

• Adult Stem Cell Research (ASCR) Network
• Australian Stem Cell Centre
• Australasian Society for Stem Cell Research (ASSCR)
• Basel Stem Cell Network (BSCN)
• Beta Cell Biology Consortium
• Canadian Stem Cell Networks
• Cancer Cytogenomics Microarray Consortium (CCMC)
• China Stem Cell Network
• Columbia University Stem-Cell Consortium
Cancer Stem Cell Consortium (CSCC)
• Danish Centre for Stem Cell Research
• Europe's - Innovative Medicines Initiative (IMI)
• European Consortium for Stem Cell Research
• European Stem Cell Network
• European Mantle Cell Lymphoma Network
• European Human Embryonic Stem Cell Consortium (ESTOOLS)
• European Consortium for Stem Cell Therapy in Neurodegenerative Diseases
• German Society for Stem Cell Research
• International Serious Adverse Event Consortium (iSAEC)
• International Stem Cell Initiative (ISCI) and their recent paper
• Iranian Stem Cell Network
• International Consortium of Stem Cell Networks
• Interstate Alliance on Stem Cell Research (IASCR)
• Israel Stem Cell Society
• International Stem Cell Forum
• International Society of Stem Cell Research
• Lymphoma Information Network
• Life Sciences Network Search Nature
• Midwestern Progenitor Cell Consortium
• Migrating Cancer Stem Cells Consortium
• Map of Worldwide Stem Cell Research Centers
• Myeloma Stem Cell Network
• NSW Stem Cell Network
• Norwegian Stem Cell Research Center
• New Jersey Stem Cell Network
• New England Stem Cell Consortium
• Ohio Stem Cell Network
• Predictive Safety Testing Consortium (PSTC)
• Research Experience of Stem Cells in EUropean Society
• Scottish Stem Cell Network
• Stem Cell Network North Rhine Westphalia
• Swiss Stem Cell Network
• ScanBalt Stem Cell Research Network
• Sanford Consortium
• Stem Cell Action Network
• Student Society for Stem Cell Research
• Stem Cell Network Asia Pacific (SNAP)
• Stem Cell Research Forum of India
• Southern California Stem Cell Consortium
• Singapore Stem Cell Consortium (SSCC)
• Southeast Stem Cell Consortium
• The Stem Cell Research Network (Invitrogen)
• The funGenES Consortium
• The New York Stem Cell Foundation
• The Stem Cell Instrumentation Foundry (SCIF)
• Taiwan Society for Stem Cell Research (TSSCR)
• UK National Stem Cell Network
• University of Liverpool Stem Cell Consortium (ULSCC)
• University of California Merced Stem Cell Research Consortium

Stem Cell Banks

• European Human Embryonic Stem Cell Registry
• Embryonic Stem (HUES) Cell Collection
• Global Bio Resource Center ATCC
• National Stem Cell Bank (NSCB)
• Singapore Stem Cell Bank (SSCB)
• Stem Cells Collection
• UK Stem Cell Bank
• WiCell, A Non-Profit National Stem Cell Center

Databases for Worldwide Tumor Banks

• • AndalusianRegional Tumour Bank
  • Australian ProstateCancer Tissue Bank
  • Australia Breast CancerTissue Bank
  • ArizonaCancer Center Tumor Bank
  • AIDS& Cancer Specimen Resource
  • BritishColumbia Breast Cancer Tumour Bank
  • BritishColumbia Tumour Tissue Repository
  • CanadianTumour Repository Network
  • Children’sCancer and Leukaemia Tissue Bank
  • Cancer Center Tissue Bank- Fudan University
  • CancerTissue Bank Research Centre
  • Confederationof Cancer Biobanks
  • Duke Cancer Tissue Bank
  • EuropeanCancer Biobank
  • EuropeanSarcoma & Tumour Bank
  • FoxChase Tumor Bank
  • Greenville HospitalSystem Cancer Biorepository
  • GeorgiaRegents University Tumor Bank
  • IranNational Tumor Bank
  • Inflammatory BreastCancer Biobank
  • LudwigBoltzman Tumour Bank
  • LawsonBrain Tumour Tissue Bank
  • LomaLinda University Cancer Center Biospecimen Laboratory
  • ManitobaBreast Tumour Bank
  • MD Anderson Gynecologic CancerTissue Bank
  • National Cancer InstituteBiorepositories
  • NeuroendocrineTumors Biobank
  • OntarioTumour Bank
  • OchsnerTumor Tissue Bank
  • QueenslandChildren’s Tumour Bank
  • PROCUREQuebec Prostate Cancer Biobank
  • Saint-LucTumour Bank
  • SpanishNational Tumour Bank Network
  • SouthwestFrance Tumour Bank
  • SouthamptonTumour Bank
  • SunnybrookTumour Bank
  • SouthTexas Tumor Bank
  • TumorBank Bern
  • TumourBank of Provence
  • Universityof Massachussets Cancer Tissue Bank
  • University of MichiganHuman Breast Cancer Cell Lines
  • UCSFBrain Tumor Tissue Bank
  • Victorian Cancer CareBiobank
  • WestmeadPaediatric Tumour Bank
  • WalesCancer Bank

Stem Cell Training Courses

United States Of America:

• A Complete Lits of NIH Sponsored Short-term Training Courses In Human Embryonic Stem Cell Culture Techniques
• A Complete Lists of Short-term Training Courses in Both Human Embryonic as well as Adult Stem Cells. Site maintaining by ISSCR

Training Courses in Wordlwide

• Stem Cell Research Training Argentina
• Stem Cells & Regenerative Medicine Summer school Greece
• Stem-Cell Summer Workshop UK
• Stem Cell Differentiation Training Course Italy 

B) Cancer and Stem Cell Associated Resources and Platforms

 Stem Cell General

• Cancer Stem Cell News (blog from the Cancer Stem Cell Consortium (CSCC)
• Monthly Technical Tip on Stem Cells
• Nature Posters (cancer pathways, stem cell fate, etc)
• NIH Stem Cell Information
• Stem Cell Database
• Stem cell Lineage Database (SCLD)
• Stem Cell Discovery Engine (SCDE)
• Stem Cell Genomics Database
• Stem Cell Genome Anatomy Project
• Reports on Stem Cells -Nature
• Stem Cells and Stem Cell Transplantation
• Stem Cell News
• StemDirect
• Stromal Cell Database
• SCGAP Urologic Epithelial Stem Cells Project
• Stem Cell Therapeutic Outcomes Database

Cancer Cell General

A) Cancer Genomics: Databases, Tools to handling data and Consortium:

 I) Databases

• BroadGDAC Firehose
• Berkeley Morphometric Visualization and Quantification from H&E sections
• Cancer Imaging Archive (TCIA)
• Cancer Genome Workbench (CGWB)
• Cancer Genome Anatomy Project (CGAP)
• Cancer GEnome Mine
• CancerGEM KB(CancerGenomic Evidence-based Medicine Knowledge Base)
• Cancer Genome Atlas (TCGA) Data Portal
• Data AccessCompliance Office (DACO): Handles requests from scientists
• FunSeq: Tool for Identification of Candidate Drivers in Tumor Genomes
• Genomics of Drug Sensitivity in Cancer
• Integrative Genomics Viewer (IGV)
• ICGC Data Portal
• Regulome Explorer Tools
• Roche Cancer Genome DatabaseMutome
• Software for De novo discovery of mutated driver pathways
• UCSC Cancer Genomics Browser

II) Visualizing cancer genomics data:

• cBio Cancer Genomics Portal
• Cancer Genome Workbench (CGWB)
• Cytoscape
• Caleydo StratomeX
• Circos
• CircleMap
• caArray
• Gitools
• Genomica
• GeneExpression Omnibus (GEO)
• IntOGen
• Integrative Genomics Viewer (IGV)
• NAViGaTOR
• Oncomine
• Regulome Explorer
• Savant Genome Browser
• Tumorscape

B) Cancer Cell General

• Apoptosis
• Atlas of Genetics and Cytogenetics in Oncology and Haematology
• Broad-Novartis Cancer Cell Line Encyclopedia (CCLE)
• CellProfiler  Cell image analysis software
• Chemopreventive Agents
• canSAR:an integrated cancer translational research and drug discovery resource
• Cancer Immunome Database
• Catalogue of Somatic Mutations in Cancer (COSMIC)
• Cancer - Gateway
• Cancer Database
• Carcinogenic Potency Database (CPDB)
• Cancer Cell Line Project (Sanger)
• Cytogenetic Resources
• Cancer Images Database (NCI )
• ChemMine Tools , online service for small molecule data analysis
• Chemical–protein interactome (CPI)
• Database of Chromosome Aberrations in Cancer
• Developmental Therapeutics Program (NCI/NIH)
• Directory of Research Tools and Services for Cancer Researcher
• Database of Orthologous Promoters
• Early Detection Research Network (EDRN)
• EORTC Protocols
• Genetic Associations Database
• Integrated genomic database of non-small cell lung cancer
• Locus Specific Mutation Databases
• Leukemia and Lymphoma Society World's Largest Organization
• Multiple Myeloma Genomics Portal
• Online CGH Tumor Database
• OncoLink
• Pharmocogenetics and Pharmacogenomics Knowledge Base (Pharmgkb)
• Search for Drug Adverse Reaction Target
• Semantic-JSON Integrating multiple life science databases
• Therapeutic Target Database

Ancient and Alternative Medicine Database:
i)General:

• Chinese Medicine Database
• Complementary and AlternativeTherapies (basic guide)
• Dietary Supplement Factsheets
• FDA Poisonous Plant Database
• FakeCancer Cures (from FDA)
• Herbal medicine
• Licensed Natural Health Products Database (Canada)
• Medicine Plus
• NAPRALERT (Database of all natural products)
• Native American Ethnobotany
• Naturally Occurring Plant-based Anti-cancerCompound-Activity-Target database (NPACT)
• TCMID (Traditional Chinese Medicine Integrative Database)for herb molecular mechanism analysis

ii) Neutraceutical based cancer control: Part 1

Associations:

• American Nutraceutical Association
• British Columbia Functional Food and NutraceuticalNetwork
• European Nutraceutical Association ENA 
• Nutra India Summit 
• ISNFF ‎ The International Society for Nutraceuticals and Functional Foods 
• Dutch Nutraceutical Association
• Macau Nutraceutical Association  

General:

• Computer Access to Research on DietarySupplements (CARDS) Database
• Cyberbotanica:plants and cancer treatment
• Dietary Supplement Ingredient Database (DSID)
• Plant extract database
• Rain-tree Plants
• Plant Extracts
• Biologic nutrigenomics
• GMO Compass
• Complementary and Alternative Therapies
• Prediction Tools
• International foodcomposition table/database directory
• USDA NationalNutrient Database for Standard Reference
• IngredientDictionary  

Rare Diseases

• Genome Variation Alles Frequencies Worldwide  (FINDbase)
• Diseases Database
• Diseases and Stem Cells
• Rare-cancer
• Specialized Search Engine For Rare Diseases

 Cell Signaling Platforms

• Pathguide Complete listing of all pathways resources
• Angiogenesis Interactive Interactome
• Apoptosis Regulators
• Alliance for Cellular Signaling
• Biocarta Signalling-pathway maps with extensive database links
• Biomolecular Object Network Databank Molecular complexes and pathways
• Biological Pathway Exchange  
• Cytokines Online Pathfinder Encyclopedia
• CellDesigner
• Cell Signaling Resources 1
• Cell Signaling Resources 2
• Collection of Pathway Maps (KEGG)
• ConsensusPathDB: functional interaction networks
• GeneAssist Pathway Atlas
• Genome-Linked Application for Metabolic Maps (GLAMM)
• Genemania Find new members of a pathway or complex
• Nuclear Receptor Resource
• NetSlim: high-confidence curated signaling maps
One –Stop Guide for Pathway Analysis
• Pathway Interaction Database
• Pathway Central
• PANTHER Pathway
• Pathway Hunter Tool
• ResNet Databases
• ResponseNet Understanding of the underlying cellular response
• Signal Transduction Knowledge Environment
• Signaling Interactive Pathways
• Signal Transduction Resources
• UCSD-Nature Signaling Gateway
• iPath2.0 Visualization and analysis of cellular pathways

Kinase Phosphatase Resources
Kinase Resources

• AtTome: Genome Express Database
• Biological DataBase of Protein Loops
• Binding Database
• CDKN2A Database
• Cell Migration Knowledgebase (CMK)
• Database of Receptor Tyrosine Kinase
• Genomics, Evolution and Function of Protein Kinases
• Database of S/T/Y Phosphorylation Site
• Group-based Phosphorylation Scoring Method
• Kinase Sequence Database
• Kinase database - Functional Domains of Each Gene Product
• Kinase Substrate Database
• Kinbase
• Kinase Interactome and Phospho-Protein Database
• KinMutBase
• Kinase Classification
• MoKCadatabase—mutations of kinases in Cancer  
• Protein Kinase C
• Kinase-Disease Associations
• Protein Kinase Resource
• Protein Information Resources
• Protein Family Sites and Resources
• Path Case: Pathways Database System
• Receptor Tyrosine Kinase (RTK) Networks Consortium
• Scansite Predicts Phosphorylation Sites and Specific Domain-Binding Regions
• Targeting the Kinome

Phosphatase Resources

• PhosphoSitePlus

Inhibitors

• Dna Protein Kinase Inhibitor
• Protein Kinase Inhibitors
• Tyrosine Kinase Inhibitors

Epigenetics Resources
Chromatin Databases:

• ChIP-SeqAnalysis Server:
• CisGenome:
• PeakSeq:

 DNA Methylation Databases :

• CpG Island Detection:
• CpGPlot:
• CpG Viewer:
• CpG Island Searcher:
• CpG and GC Plotter:
• CpGfinder:
• CpG Promoter:
• EpiGRAPH:
• MethyCancer Database:
• MethDB:
• MethPrimerDB:
• MethPrimer:
• PubMeth Database:
• RegTransBase:  
• StatEpigen  database:

Networks:

• Alberta EpigeneticsNetwork
• Epigenome :
• Epigenetics Station:
• Human Epigenome Project (HEP)
• International Human Epigenome Consortium
• Swedish Network for Epigenetics
• Multidimensional Human Embryo Eukaryotic Development
• Science Collections on Epigenomics

 Glycomics Platforms

• Bioinformatics for Glycan Expression
• Functional Glycomics Gateway
• Glycoforum
• Glycosciences
• Glypeps
• Human Disease Glycomics/Proteome Initiative (HGPI)
• GlycomeDB - A Carbohydrate Structure Metadatabase
• Integrated Technology Resource for Biomedical Glycomics
• National Center for Glycomics and Glycoproteomics
• Omics Gateway- Glycomics
• Predictions of GalNAc O-glycosylation Sites in Mammalian Proteins
• Society for Glycobiology
• Technology at Glycomics
  
  Glycomics Initiatives: 
  

  • Alliance of Glycobiologists for Detection of Cancer and Cancer Risk (USA)
  • Consortium for Functional Glycomics (CFG) (USA)
  • UK Glycoarrays Consortium
  • HUBO

  
  

  Glycan tools:

  
  

  • GlycoMod Glycan
  • Glycofragment Masses 
  • GlycoPep DB carbohydrate database
  • Carbohydrate 3D Structure Predictor
  • Tool for 2D glycan structure Drawings
  • KEGG GLYCAN
  • Glycogene database
  • Glycosyltransferases
  • glyco-epitopes 
  • GlycomeDB - A carbohydrate structure metadatabase
  • ComprehensiveMonosaccharide Database
  • CAZy (Carbohydrate-Active Enzymes)
  • CarbBank - Database of sugarmoieties in glycoproteins.
  • Glycan Structures Database
  • Glycan Binding ProteinMolecule Pages
  • Glycan Profiling
  • Glycosylation Pathways
  • XylogluccanOligosaccharide Database
  • SUGABASE Glycomics portal

Genomics Platforms 

• Alternative Splicing Database (ASD)
• Automated Splice Site Analyses
• Breast Cancer Gene Database (BIC)
• Broad Integrative Genomics Portal
• BioProfiling Analyses and interpretation of biological data
• Ccancer (an automatically collected database of gene lists)
• Collection of 3D structure database for over 40,000 cancer drugs
• Cadherins Resources
• Cancer Genome Project
• Cancer Gene Data Curation Project
• c-Myc Database
• Cancer Gene Expression Database (CGED)
• Cancer GEnome Mine
• Cancer Gene Census
• Connectivity Map
• Comparative Toxicogenomics Database (CTD)
• COSMICMart (COSMIC BioMart) : mineand combine somatic mutations with other data sets
• COLT-Cancer:essential genes in human cancer cell lines
• Database For Cancer Gene Mutations
• Database of Leukemia Genes (LeGenD)
• GeneNetwork
• GenePattern
• Gene Set Enrichment Analysis (GSEA)
• Embryonic Stem Cell Transcriptomes
• Expressed Gene Anatomy Database
• EGFR Mutation Database
• Functional Annotation of the Mammalian Genome
• Human Genome Database
• Genotype-To-Phenotype (G2P) database (GEN2PHEN)
• Gene Seeker
• Gene Quantification
• GenBank
• GETPrime: a gene- ortranscript-specific primer database for quantitative real-time PCR
• GermOnline 4.0: genomics gatewayfor germline development, meiosis and the mitotic cell cycle
• GEne Network GEnerator
• Giving Unique and Meaningful Names to Every Human Gene
• GeneCards Sources
• Genome Medicine Database of Japan (GeMDBJ)
• Gene Expression Data Portal (GEDP)
• HUGENET
• Human Gene Sorter UCSC
• Human Genome Variation Database of Genotype-to-Phenotype (HGVbaseG2P)
• Human Gene Mutation Database
• Human Genes and Diseases Database
• Human Genome Structural Variation
• Koyoto Encyclopedia of Genes and Genomes
• International Nucleotide Sequence Database Collaboration
• International Cancer Genome Consortium Data Portal
• IntOGen (IntegrativeOncoGenomics): data for identification of genes in cancer development
• KEGG Mutation Databases
• Knowledgebase For Fusion Sequences
• Mitomap: Human Mitochondrial Genome Database
• Molecular Signatures Database (MSigDB)
• MYC Gene Database
• NAR Database
• NetGene2 Prediction of splice sites
• NCG3.0:Network of Cancer Genes
• Oncomine Research Platform
• Oral Cancer Gene Database
• Open REGulatory ANNOtation database (ORegAnno)
• Pancreatic Cancer Gene Database (PC-GDB)
• p53 Database
• ProDom
• Roche Cancer Genome Database (RCGDB)
• RNAi Gateway
• TargetFinder (similar expression pattern to a group of user-selected genes)
• The RNA World Website
• RNA Modification Database
• Repository of Three-Dimensional Structural Information - Nucleic Acids
• Retrovirus Tagged Cancer Gene Database (RTCGD)
• SiteSeer
• Stanford Genomic Resources
• Stem Cell Genomics Database
• Stanford Microarray Database
• Structural Genomics Consortium
• Sequence Retrieval System
• TP53 Mutation Database
• Trsdb A Proteome Database of Transcription Factors
• Tumor Gene Family of Databases
• UniGene: View of the Transcriptome
• UNC-Chapel Hill Microarray Database Curators
• Wnt Resources

Single Cell Genomics Analysis Resources:

A) Cell lines:

 Stem cell lines database

• StemDB
• StemBANCC (for high quality human induced pluripotent stem (iPS) cell lines)
• Pluritest - assay for pluripotency in human cells
• International Stem Cell Registry

Cancer cell lines database

• ATCC cell line
• Broad-Norvartis Cancer Cell Line Encyclopedia (CCLE)
• Breast cancer cell lines
• Coriell Cell Repositories
• Cell Line DataBase (CLDB)
• Cell Line Integrated Molecular Authentication database (CLIMA)
• CellLineNavigator database
• Commonly used cell lines in cancer research
• CellMiner
• European database collecting the informationof frozen tumor tissue specimens
• European Collection of Cell Cultures (ECACC),
• European Searchable Tumour line Database(ESTDAB)
• German biobank registry
• German Collection of Microorganisms and CellCultures
• Genomics of Drug Sensitivity in Cancer database (GDSC)
• Human Tumor CellLine Screen
• HEK293 Cell Database
• International Gene Trap Consortium (IGTC)
• Interlab Cell Line Collection (ICLC)
• IGRhCellID: integrated genomic resources of human cell lines for identification
• Life Technologies Corporation Cell Line Database
• Prostate Cancer Cell Lines Database
• Searchable Database of Short-Tandem Repeat GenotpyingData for Cell-Lines
• Sanger COSMIC Cell LineProject

Whole cell database:

• CellBase: retrieving biologicalinformation fromheterogeneous sources
• CCDB Cell Centered Database: for high resolution 2D, 3Dand 4D data from microscopy imaging
• HMDB: Human Metabolome Database
• TissueNet: human tissue protein–protein interactions
• WholeCellKB:for comprehensive whole-cell models

 B) Transcriptome databases:

Human genes and expression:

• ChiTaRS: chimeric transcripts and RNA-sequencing data
• Genenames
• GeneCodis3: for functional genomics
• Genomicus: for comparative genomics in eukaryotes
• H-InvDB Human gene database
• Public gene expression data

  Regulatory genes:

• Cscan: finding common regulators of a set of genes
• Composite regulatory elements
• TRED: The Regulatory Element Database
• TESS: Transcription Element Search System
• TFClass: classification ofhuman transcription factors

Transcription factor binding site:

•  Annotated regulatory Binding Sites (ABS)
• Animal Transcription Factor Database (AnimalTFDB)
• Atlas of UTR Regulatory Activity (AURA)
• Cis-regulatory element database (cis RED)
• DNA-Binding Domain: Transcription Factor PredictorDatabase (DBD)
• DNA-Protein Interactions Database (DPInteract)
• DBD2BS: connecting a DNA-binding protein with itsbinding sites
• DBTSS: Transcriptional StartSites
• EPD: the eukaryotic promoterdatabase
• Evolutionary conserved region database (ECRbase)
• Factorbook: transcription factor-binding data (ENCODE consortium)
• GeneMANIA
• HTPSELEX
• HTPSELEX transcription factor binding site sequences
• HOCOMOCO: transcription factor bindingsites models
• Human Transcriptional Regulation InteractionDatabase (HTRIdb)
• Intergrated Transcription Factor Platform (ITFP)
• kmer-SVM:a web server for identifying predictive regulatory sequence
• MAPPER
• MotifMap
• MAPPER transcription factor binding sites
• Mammalian Promoter Database (MPromDb)
• Object Oriented Transcription Factors Database (ooTFD)
• Protein, Signalling, Transcriptional Interactions& Inflammation Networks
• Gateway (pSTIING)
• Post-Translational Modification-Switchboard (PTM-Switchboard)
• A Public Database of Transcription Factor and RegulatorySequence (PAZAR)
• RegTransBase
• SwissRegulon, a databaseof genome-wide annotations of regulatory sites
• Transcription Factor Binding Profile Database(JASPAR)
• Transcription Factor encyclopedia (TFe)
• Transcription Regulatory Regions Database (TRRm)TRANSFAC transcription factors binding sites andregulated genes analysis
• TrSDB-TranScoutDatabase for eukaryotic transcription factors

• Validatedleucine-rich nuclear export signals (ValidNESs)

World of Small RNAs:

Database of miRNA

• ARGONAUTE2
• Cancer miRNA prioritization
• miRBase
• miRò: a miRNA knowledge base
• miRNAMap
• miRNApath
• miRGen
• miRex

• Database of miRNA Target:
• TarBase
• Polymorphism in microRNA Target Site (PolymiRTS)
• Comparative Genomics Analysis of MicroRNA
• Locked Nucleic Acids (LNA) - Exiqon's 
• miRNA Prediction Tools
• miR-abela
• MIRScan
• MiRAlign
• RNAmicro
• TripletSVM
• miRNA Target Prediction Tools
• DIANA Micro Test
• miRacle
• miRanda
• miRNA-Target Predict
• MicroInspector
• Pic Tar
• RNA22
• RNAhybrid
• TragetScan

• RNAi Database
• E-RNAi
• RNAi
• RNAi Web
• RNAi Codex

       Database of siRNA

• siRNA Database and Resources for RNA Interference Studies
• SiRecords
• siRNAdb
• Noncoding RNA (ncRNA)
• Noncoding RNA (ncRNA) Database
• Noncoding RNA database - Mammalian (RNAdb)
• NcRNA Expression Database (NRED)

Proteomics Platforms

• 2-D PAGE Databases
• Atlas of Transcriptomics and Proteomics in Human Liver  
• Atlas Antibody
• Biological Macromolecular Structure
• CancerResource:cancer-relevant proteins and compound interactions
Compendium of Targeted Proteomics Assays  
• Curated Resource of Core Pathways and Reactions in Human Biology
• Database of Protein Disorder
• Database of Proteomics Measurements Under the Influence of miRNAs
• dbDEPC: Differentially Expressed Proteins in humanCancers  
• Encyclopedia of Life (EOL) Complete Proteome of Every Living Species
• ExPASy (Expert Protein Analysis System)
• Global Proteome Machine Database
• Genome Medicine Database of Japan Proteomics (GeMDBJ)
• General Repository of Interaction Datasets(BioGRID)
• Human Protein Reference Database
• Human Cancer Proteome Variation Database
• Human Protein Expression and Localization in a Large Variety of Normal
• Liver Proteome
• Localization and Expression of Proteins(LIFEdb)
• NoPdb: Nucleolar Proteome Database
• Molecular INTeraction database
• Protein Atlas
• PRoteomics IDEntifications Database PRIDE
• Proteome Players and Resource Links
• Proteomics Research Resources for Integrated Biology
• Protemoics Resources –HSLS
• Proteome Database of Cultured Human Cells
• Structural Classification of Proteins
• Sciencemag Proteomics Resources

Molecular Modeling and BioInformatics Platforms

• Atlas of Side Chain Interactions
• AceDB Genome Database
• Bioinformatics and Genomics Resources
• Biological software
• Bioinformatics Tools
• Bioinformatics World
• Computational Cancer Genomics
• Cytoscape
• Genes-to-Systems Breast Cancer (G2SBC) Database
• IMGT International ImMunoGeneTics information System
• Molecular Docking,Drug Design & Computational Chemistry Great Site!
• NIH Center for Molecular Modelling
• Systems Biology Markup Language (SBML) Biochemical Reaction Networks
• System Biology Worldwide
• Tools for the Molecular Biology One-Stop Wonder!

Nanomedicine Platforms

• European Network of Excellence in Nanobiotech
• European Society of Nanomedicine
• Norwegian NanoMedicine Network (amazing links!)
• NanoHub
• National Nanotechnology Initiative
• Nanotechnology Database (NSTI)
• Nanotechnology Online Database (ICON)
• Nanotechnology Industries + Links Database
• Nanomedicine Development Centers
• Nanotechnology and Nanoscience
• Organizations and International Tissue Engineering Projects
• International Association of Nanotechnology (IANT)
• Tools in Computational Biology and Data Mining

Tissue Engineering and Regenerative Medicine

• Australasian Society for Biomaterials and Tissue Engineering
• Biomedical Engineering Society
• Biomedical Engineering Network
• British Society for Matrix Biology
• European Tissue Repair Society
• German Society for Regenerative Medicine
• Japanese Society For Regenerative Medicine
• London Regenerative Medicine Network
• Multi-Agency Tissue Engineering Science (MATES)
• National Center for Regenerative Medicine
• Organizations and International Tissue Engineering Projects
• Resources For Tissue Engineering
• Society for Tissue Engineering and Regenerative Medicine India
• San Diego Consortium for Regenerative Medicine (SDCRM)
• Tissue and Cell Engineering Society
• Tissue Viability Society
• Tissue Engineering International and Regenerative Medicine Society
• UK Society for Biomaterials
• Who's Who in the world of Regenerative Medicine

Model Organisms

Caenorhabditis elegans (nematode)

• Caenorhabditis elegans WWW Server Papers, Meetings, Researchers, etc
• Directory of Worm Base
• Databases as well as Internet Resources About C. elegans
• Trans-NIH C. elegans Initiative
• Worm Protocols

Danio rerio (zebrafish)

• Trans-NIH Zebrafish Initiative
• Zebrafish Information Network

 Drosophila melanogaster (fruit fly)

• Berkeley Drosophila Genome Project
• Berkeley Drosophila Genome Project -Splice Site Prediction
• Drosophila Genomics Resource Center (DGRC)
• FlyBase Database of Sequence Data from the Drosophila Genome
• High-throughput Analysis - Datas from Drosophila cell culture
• Interactive Fly Genetic Glossary of Fruit Fly Biochemical Pathways and Organs
• Trans-NIH Fly Initiative
• Worldwide Drosophila Research Labs

Mus (Mouse)

• European Conditional Mouse Mutagenesis Program
• European Mutant Mouse Pathology Database
• International Knockout Mouse Consortium
• JAX Mice Database
• Mouse Genome Informatics
• Mouse Genome Project
• Mouse Genome Resources (NCBI)
• Mouse Tumor Biology (MTB) Database
• Trans-NIH Mouse Initiative

Rattus(Rat)

• Genomics and Genetics
• Genome Database

• Farm Animals and Others

• Farm Animal Genomics Public Repositories for Genome Mapping Data
• Xenbase
• Model Organism Parameciumtetraurelia

C) General Platforms

  Clinical Trials

• Clinical Research in Human Volunteers
• CoCanCPG (Coordination of Cancer Clinical Practice Guidelines in Europe)
• DeReG : German Somatic Gene Transfer Clinical Trial Database
• International Clinical Trials Registry Platform

Life Sciences Directory

• European Network of Breast Development and Cancer Labs
• Biochem4schools
• ExPASy Life Science Directory
• European Life-Science Organisations Directory
• International Life Science Community
• Life Sciences Directory
• Online Biotech Buyers Guide
• Open Wet Ware
• Research Tools
• Sciweb
• Science Gateway to Journals, Tools, etc
• Science Open Directory Project

Dictionary

• On-line Medical Dictionary
• Online Dictionaries and Translators
• PDF and Word Converter (free)

Blogs

• Niche Blog
• Research Blogging
• Science Blogs

 Discussion Forums

• Biotechniques Forum
• Biology Online
• Biocompare Forum
• Biosciences- Biotechniques Forum
• Protocol Online
• Scientist Solutions

Literature Searches

• Automated Literature Search Tool
• Alternative interface to the PubMed
• BioMed Central Online Databases
• Cluster Med
• CELLPEDIA: a repository for human cell information for cell studies anddifferentiation analyses
• Entrez
• Expert Essays: find in-depth, explanatory information relating to citation databases
• eTBLAST
• Gopubmed
• Medline Ranker
• Master Journal List: search the master database of all the journal titles
• Pubget
• ResearcherID: find collaborators, review publication lists
• Scientific Literature Digital Library
• Scitopia
• Xploremed

Patent Searches

• European Patent Office
• Stem Cell Patents
• U.S. Patent Office

 Grants and Scholarships

• Database for Research Grants
• European Research Framework Programme Grants
• Fundraising & Grants Directory
• Funding Resources for Researchers
• Find money for School and College
• Grants Net
• Major Funding Resources for Cancer
• Scan Grants

Symposium and Conferences

• Bio Organisation
• Conference Service
• Conferencealerts
• Cambridge Healthtech Institute
• Cold Spring Harbor Laboratory Meetings and Courses
• Directory of Conferences
• EURESCO Conferences
• European Molecular Biology Laboratory EMBL
• European Science Events Association
• European Molecular Biology Organisation (EMBO)
• Finbionet
• Functionalgenomics
• Gordon Research Conferences
• GTC Bio
• Goingtomeet
• Hum Molgen
• Ibclifesciences
• Jackson Laboratory Courses, Meetings and Workshops
• Keystone Symposia
• Molecular Biology Conferences
• Nature Worldwide Events Search
• SMI Online
• Selectbiosciences
• Signaling Gateway
• Science
• Scientific Associations (an additional place to find scientific happenings..!)
• Tri-conference
• The Wellcome Trust Courses and Conferences

Self Learning

• Educational Outreach
• FreeRepair Help 
• Free e-book On Regenerative Biology
• Free e-book - Biology of Cancer by Prof. Robert Weinberg
• Free On-line Biomedical Books From NCBI
• Free Book - On-line - Tissue Engineering
• Free Medical Literature Guide
• Healthcare Books from Merck
• Online Continuing Medical Education
• On-line Microarray Courses
• Madame Curie Bioscience Database
Molecular Imaging and Contrast Agent Database (MICAD)
• Bioentrepreneur (Nature Biotechnology)
• Principles of Biology
• Search Free Books PDF Files
•  The Merck Manual Go-To HomeGuide for Symptoms

Chill out

• Cells Alive
• Citizendium
• Cell Biology and Astronomy Competition
• Free and Tailored MicroRNA Seminar at Your Venue
• Cheap Hostels, Hotels, Flight Tickets
• Do It Yourself Scholar
• Funny Subjects Real Articles from Pubmed
• Global Medicine Network
• Giving Pledge
• Highlycited:Most highly influential scientists and scholars worldwide
• Labroots
• Molecular Gastronomy and the Science of Cooking
• Personality Test
• Resources To Help You Write Your Papers
• R&D Challenges
• ResearchGATE
• ResearchNet
• Science Songs Net
• Science Business
• Scientific Peer Review, ca. 1945
• Time Zone Converter
• Trade secretes: a nature network blog by bioentrepreneur
• World History Articles and Pictures
• Web Toolbox
• WiLS Database - Expert Women in Life Sciences

Application of Cancer and Stem cell Resources 

Personalized Cancer Medicine  

i)   Associations and Databases:

•  Association European Personalised Medicine
• Coriell Personalized Medicine Collaborative
• European Society of Pharmacogenomics and Theranostics
• Gorgetown Database of Cancer for Personalized Medicine (G-DOC)
• European Association for Predictive, Preventive and Personalised Medicine
• Personalized Medicine Coalition
• Worldwide Innovative Networking in Personalized Cancer Medicine

ii) Cancer and Stem cell Pharmacology:

• Cancer Stem Cell Research Database (Maven Semantic)
• Chemonaut (lead-like screening compounds and building blocks)
• Myriad  for Healthcare Professional
• Pharmacogenetics-Cell line Database

iii)
a) SNP and Genome Variation:

• Catalogue of Structural Variation in the Human Genome 
• CaSNP (interrogating copy number alterations of cancer genome from SNP array data)
• Candidate causal SNPs and their causal pathways
• Functional SNP (F-SNP)
• Mutalyzer 2.0 β-5 (to support checks of sequence variant nomenclature based on HGVS)
• PolyPhen-2 (predicts possible impact of an amino acid substitution on the structure and function of a human protein)
• PolyPhen Polymorphism Phenotyping  
• PupaSuite ( tool that allows for the selection of relevant SNPs within a gene)
• SNP on NCBI
• SNPs3D 
• SNPnexus Database
• SNP Structural Modelling Tool 
• SNP effect (Molecular phenotyping of human SNPs and disease mutations)
• SNP in Regulatory Gene Regions 
• SNAP (tools for designing sequence primers and evaluating RNA splicing effects)
• SNP2PROT(to map human DNA variation onto proteins)
• Variants GPS (Genotyping Data and Analysis, result from next generation sequencing)

b)Gene mutation and associated databases:

• ALlele FREquency Database
• Atlas of Genetics and Cytogenetics in Oncology and Haematology
• CGAP Genetic Annotation Initiative (GAI)
• European Directory of DNA diagnostic Laboratories (EDDNAL)
• Genetic Association Database 
• Genome Wide Association Database (GWAS DB)
• GeneCards 
• HGBASE (Human Genic Bi-Allelic Sequences)
• Human Gene Mutation Database (HGMD)
• International HapMap Project 
• Immuno Polymorphism Database (IPD)
• Mutation Discovery Database
• Mammalian Gene Mutation Database (MGMD) (database of published mutagen-induced gene mutations in mammalian tissues)
• Universal Mutation Database