New entries for the month of "March 2012 to May 2012”
(Please use the folder “Content of the Blog", on the right side of the page to access the following links. I have also highlighted /shaded the new entries in light orange color, for your convenience and /or quickly to locate the specific web page).
Wishing you a Wonderful Day!!!
Under the folder of Networks and Consortium:
Cancer Cytogenomics Microarray Consortium (CCMC)
Europe's - Innovative Medicines Initiative (IMI)
International Serious Adverse Event Consortium (iSAEC)
Under the folder of Cancer Cell General:
Broad-Novartis Cancer Cell Line Encyclopedia (CCLE)
CellProfiler Cell image analysis software
Integrated genomic database of non-small cell lung cancer
Multiple Myeloma Genomics Portal
Under the folder of Cell Signaling Platforms:
Pathway Central
Under the folder of Genomics Platforms:
Broad Integrative Genomics Portal
Connectivity Map
GenePattern
International Nucleotide Sequence Database Collaboration
Molecular Signatures Database (MSigDB)
Under the folder of World of small RNAs: microRNA:
Cancer miRNA prioritization
Under the folder of Self-learning:
Molecular Imaging and Contrast Agent Database (MICAD)
Principles of Biology
Under the folder of Chill-out:
WiLS Database - Expert Women in Life Sciences
Saturday, March 3, 2012
Monday, July 2, 2007
* (A)
Professional Stem cell Organizations, Networks and Consortia
Kinase Resources
Inhibitors
Epigenetics Resources
Chromatin Databases:
DNA Methylation Databases :
Drosophila melanogaster (fruit fly)
Life Sciences Directory
Grants and Scholarships
a) SNP and Genome Variation:
Professional Stem cell Organizations, Networks and Consortia
- Life Sciences Network Search Nature
- The Stem Cell Research Network (Invitrogen)
- A Complete Lists of Short-term Training Courses in Both Human Embryonic as well as Adult Stem Cells. Site maintaining by ISSCR
- Cancer Stem Cell News (blog from the Cancer Stem Cell Consortium (CSCC)
- Nature Posters (cancer pathways, stem cell fate, etc)
- NIH Stem Cell Information
- Stem Cell Database
- Reports on Stem Cells -Nature
- Apoptosis
- Atlas of Genetics and Cytogenetics in Oncology and Haematology
- Breast Cancer Drug Resistance Screen Database (BreastDB)
- Broad-Novartis Cancer Cell Line Encyclopedia (CCLE)
- Catalogue of Somatic Mutations in Cancer (COSMIC)
- Cancer - Gateway
- Cancer Database
- Carcinogenic Potency Database (CPDB)
- Cancer Cell Line Project (Sanger)
- Cytogenetic Resources
- Cancer Images Database (NCI )
- ChemMine Tools , online service for small molecule data analysis
- Chemical–protein interactome (CPI)
- Database of Chromosome Aberrations in Cancer
- Developmental Therapeutics Program (NCI/NIH)
- Directory of Research Tools and Services for Cancer Researcher
- Database of Orthologous Promoters
- Early Detection Research Network (EDRN)
- EORTC Protocols
- Genetic Associations Database
- Integrated genomic database of non-small cell lung cancer
- Locus Specific Mutation Databases
- Leukemia and Lymphoma Society World's Largest Organization
- LocusLink
- Multiple Myeloma Genomics Portal
- Online CGH Tumor Database
- OncoLink
- Pharmocogenetics and Pharmacogenomics Knowledge Base (Pharmgkb)
- Search for Drug Adverse Reaction Target
- Semantic-JSON Integrating multiple life science databases
- Therapeutic Target Database
- Genome Variation Alles Frequencies Worldwide (FINDbase)
- Diseases Database
- Diseases and Stem Cells
- Rare-cancer
- Specialized Search Engine For Rare Diseases
- Apoptosis Regulators
- Alliance for Cellular Signaling
- Biocarta Signalling-pathway maps with extensive database links
- Biomolecular Object Network Databank Molecular complexes and pathways
- Cytokines Online Pathfinder Encyclopedia
- CellDesigner
- Cellmap Cellular pathways implicated in cancer
- Cell Signaling Resources 1
- Cell Signaling Resources 2
- Collection of Pathway Maps (KEGG)
- ConsensusPathDB: functional interaction networks
- GeneAssist Pathway Atlas
- Genemania Find new members of a pathway or complex
- Nuclear Receptor Resource
- NetSlim: high-confidence curated signaling maps One –Stop Guide for Pathway Analysis
- Pathway Interaction Database
- Pathway Slides and Charts
- PANTHER Pathway
- Pathway Hunter Tool
- ResNet Databases
- ResponseNet Understanding of the underlying cellular response
- Signal Transduction Knowledge Environment
- Signaling Interactive Pathways
- Signal Transduction Resources
- UCSD-Nature Signaling Gateway
Kinase Resources
- AtTome: Genome Express Database
- Biological DataBase of Protein Loops
- Binding Database
- CDKN2A Database
- Cell Migration Knowledgebase (CMK)
- Database of Receptor Tyrosine Kinase
- Genomics, Evolution and Function of Protein Kinases
- Database of S/T/Y Phosphorylation Site
- Group-based Phosphorylation Scoring Method
- Kinase Sequence Database
- Kinase database - Functional Domains of Each Gene Product
- Kinase Substrate Database
- Kinbase
- Kinase Interactome and Phospho-Protein Database
- KinMutBase
- Kinase Classification
- MoKCadatabase—mutations of kinases in Cancer
- Protein Kinase C
- Kinase-Disease Associations
- Protein Kinase Resource
- Protein Information Resources
- Protein Family Sites and Resources
- Protein Kinase Database Predicting In Vivo Kinase-Substrate Relationships
- Path Case: Pathways Database System
- Receptor Tyrosine Kinase (RTK) Networks Consortium
- Scansite Predicts Phosphorylation Sites and Specific Domain-Binding Regions
- Targeting the Kinome
Inhibitors
Epigenetics Resources
Chromatin Databases:
DNA Methylation Databases :
- CpGPlot:
- CpG Viewer:
- CpG Island Searcher:
- CpG and GC Plotter:
- CpGfinder:
- CpG Promoter:
- EpiGRAPH:
- MethyCancer Database:
- MethDB:
- MethPrimerDB:
- MethPrimer:
- PubMeth Database:
- RegTransBase:
- StatEpigen database:
- Epigenome-noe:
- Epigenome :
- Epigenetics Station:
- Human Epigenome Project (HEP)
- International Human Epigenome Consortium
- Swedish Network for Epigenetics
- Multidimensional Human Embryo Eukaryotic Development
- Science Collections on Epigenomics
- Bioinformatics for Glycan Expression
- Functional Glycomics Gateway
- Glycoforum
- Glycosciences
- Glypeps
- Human Disease Glycomics/Proteome Initiative (HGPI)
- GlycomeDB - A Carbohydrate Structure Metadatabase
- Integrated Technology Resource for Biomedical Glycomics
- National Center for Glycomics and Glycoproteomics
- Omics Gateway- Glycomics
Genomics Platforms
- Ccancer (an automatically collected database of gene lists)
- COLT-Cancer:essential genes in human cancer cell lines Database For Cancer Gene Mutations
- Database of Leukemia Genes (LeGenD)
- Gene Set Enrichment Analysis (GSEA)
- Functional Annotation of the Mammalian Genome
- Koyoto Encyclopedia of Genes and Genomes
- KEGG Mutation Databases
- Knowledgebase For Fusion Sequences
- TargetFinder (similar expression pattern to a group of user-selected genes)
- 2-D PAGE Databases
- Atlas of Transcriptomics and Proteomics in Human Liver
- Atlas Antibody
- Biological Macromolecular Structure
- CancerResource:cancer-relevant proteins and compound interactions Compendium of Targeted Proteomics Assays
- Curated Resource of Core Pathways and Reactions in Human Biology
- Database of Protein Disorder
- Database of Proteomics Measurements Under the Influence of miRNAs
- dbDEPC: Differentially Expressed Proteins in humanCancers
- Encyclopedia of Life (EOL) Complete Proteome of Every Living Species
- ExPASy (Expert Protein Analysis System)
- Global Proteome Machine Database
- General Repository of Interaction Datasets(BioGRID)
- Human Protein Reference Database
- Human Cancer Proteome Variation Database
- Human Protein Expression and Localization in a Large Variety of Normal
- Liver Proteome
- Localization and Expression of Proteins(LIFEdb)
- NoPdb: Nucleolar Proteome Database
- Molecular INTeraction database
- Protein Atlas
- PRoteomics IDEntifications Database PRIDE
- Proteome Players and Resource Links
- Proteomics Research Resources for Integrated Biology
- Protemoics Resources –HSLS
- Proteome Database of Cultured Human Cells
- Structural Classification of Proteins
- Sciencemag Proteomics Resources
- Atlas of Side Chain Interactions
- AceDB Genome Database
- Bioinformatics and Genomics Resources
- Biological software
- Bioinformatics Tools
- Bioinformatics World
- Computational Cancer Genomics
- Cytoscape
- Genes-to-Systems Breast Cancer (G2SBC) Database
- IMGT International ImMunoGeneTics information System
- Molecular Docking,Drug Design & Computational Chemistry Great Site!
- NIH Center for Molecular Modelling
- Systems Biology Markup Language (SBML) Biochemical Reaction Networks
- System Biology Worldwide
- Tools for the Molecular Biology One-Stop Wonder!
- Norwegian NanoMedicine Network (amazing links!)
- Australasian Society for Biomaterials and Tissue Engineering
- Biomedical Engineering Society
- Biomedical Engineering Network
- British Society for Matrix Biology
- European Tissue Repair Society
- German Society for Regenerative Medicine
- International Microencapsulation Society
- Japanese Society For Regenerative Medicine
- London Regenerative Medicine Network
- Multi-Agency Tissue Engineering Science (MATES)
- National Center for Regenerative Medicine
- Organizations and International Tissue Engineering Projects
- Resources For Tissue Engineering
- Society for Tissue Engineering and Regenerative Medicine India
- San Diego Consortium for Regenerative Medicine (SDCRM)
- Tissue and Cell Engineering Society
- Tissue Viability Society
- Tissue Engineering International and Regenerative Medicine Society
- UK Society for Biomaterials
- Who's Who in the world of Regenerative Medicine
- Caenorhabditis elegans WWW Server Papers, Meetings, Researchers, etc
Danio rerio (zebrafish)
Drosophila melanogaster (fruit fly)
- FlyBase Database of Sequence Data from the Drosophila Genome
- High-throughput Analysis - Datas from Drosophila cell culture
- Interactive Fly Genetic Glossary of Fruit Fly Biochemical Pathways and Organs
- Farm Animal Genomics Public Repositories for Genome Mapping Data
- Xenbase
- Model Organism Parameciumtetraurelia
Life Sciences Directory
- European Network of Breast Development and Cancer Labs
- Biochem4schools
- ExPASy Life Science Directory
- PDF and Word Converter (free)
- Automated Literature Search Tool
- Alternative interface to the PubMed
- Expert Essays: find in-depth, explanatory information relating to citation databases
- Master Journal List: search the master database of all the journal titles
- ResearcherID: find collaborators, review publication lists
Grants and Scholarships
- Scientific Associations (an additional place to find scientific happenings..!)
- Educational Outreach
- Free e-book On Regenerative Biology
- Free e-book - Biology of Cancer by Prof. Robert Weinberg
- Free On-line Biomedical Books From NCBI
- Free Book - On-line - Tissue Engineering
- Free Medical Literature Guide
- Healthcare Books from Merck
- Online Continuing Medical Education
- On-line Microarray Courses
- Madame Curie Bioscience Database
- Bioentrepreneur (Nature Biotechnology)
- Search Free Books PDF Files
- i) Associations and Databases:
- European Association for Predictive, Preventive and Personalised Medicine
- Personalized Medicine Coalition
- Worldwide Innovative Networking in Personalized Cancer Medicine
- Cancer Stem Cell Research Database (Maven Semantic)
- Chemonaut (lead-like screening compounds and building blocks)
a) SNP and Genome Variation:
- Catalogue of Structural Variation in the Human Genome
- CaSNP (interrogating copy number alterations of cancer genome from SNP array data)
- Candidate causal SNPs and their causal pathways
- Functional SNP (F-SNP)
- Genome Variation Server (GVS)
- Mutalyzer 2.0 β-5 (to support checks of sequence variant nomenclature based on HGVS)
- PolyPhen-2 (predicts possible impact of an amino acid substitution on the structure and function of a human protein)
- PolyPhen Polymorphism Phenotyping
- PupaSuite ( tool that allows for the selection of relevant SNPs within a gene)
- SNP on NCBI
- SNPs3D
- SNPnexus Database
- SNP Structural Modelling Tool
- SNP effect (Molecular phenotyping of human SNPs and disease mutations)
- SNP in Regulatory Gene Regions
- SNAP (tools for designing sequence primers and evaluating RNA splicing effects)
- SNP2PROT(to map human DNA variation onto proteins)
- Variants GPS (Genotyping Data and Analysis, result from next generation sequencing)
- ALlele FREquency Database
- Atlas of Genetics and Cytogenetics in Oncology and Haematology
- CGAP Genetic Annotation Initiative (GAI)
- European Directory of DNA diagnostic Laboratories (EDDNAL)
- Genetic Association Database
- Genome Wide Association Database (GWAS DB)
- GeneCards
- HGBASE (Human Genic Bi-Allelic Sequences)
- Human Gene Mutation Database (HGMD)
- International HapMap Project
- Immuno Polymorphism Database (IPD)
- Mutation Discovery Database
- Mammalian Gene Mutation Database (MGMD) (database of published mutagen-induced gene mutations in mammalian tissues)
- Universal Mutation Database
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