"Cancer Stem Cell Resources"

2011-12-12T14:28:00.000-08:00

New entries for the month of "December 2011 to February 2012"

(Please use the folder “Content of the Blog’, on the right side of the page to access the following links. I have also highlighted /shaded the new entries in light grey color, for your convenience and /or quickly to locate the specific web page)

Under the folder of Stem Cell Resources General:
-Stem Cell Discovery Engine (SCDE)
Under the folder of Cancer Cell Resources General:
-canSAR: an integrated cancer translational research and drug discovery resource
Under the folder of (Cancer) Genomics:
-BCGD: Tumor Gene Family of Databases
-COSMICMart (COSMIC BioMart) : flexible way to mine and combine somatic mutations with other biological relevant data sets.
-COLT-Cancer: essential genes in human cancer cell lines
-EGFR Mutation Database
-GETPrime: a gene- or transcript-specific primer database for quantitative real-time PCR
-GermOnline 4.0: Gateway for germline development, meiosis and the mitotic cell cycle
-International Cancer Genome Consortium Data Portal
-IntOGen (Integrative OncoGenomics): data for identification of genes in cancer development
-NCG 3.0:Network of Cancer Genes
-Radiation Genes: transcriptome alterations induced by ionizing radiation in mammalian cells
Under the folder of Database of miRNA:
-miRò: a miRNA knowledge base
Under the folder of (Cancer) Proteomics:
-Atlas of Transcriptomics and Proteomics in Human Liver
-CancerResource: cancer-relevant proteins and compound interactions
-dbDEPC: Differentially Expressed Proteins in human Cancers
Under the folder of Signaling pathways:
-ConsensusPathDB: functional interaction networks
-NetSlim: high-confidence curated signaling maps
Under the folder of Kinase resources:
-MoKCa database—mutations of kinases in cancer
Under the folder of DNA Methylation Databases :
-MethyCancer: the database of human DNA methylation and cancer
Under the folder of Model organism:
-Model Organism Paramecium tetraurelia
Under the folder of Literature searches:
-CELLPEDIA: human cell information for cell studies and differentiation analyses
-Expert Essays: find in-depth, explanatory information relating to citation databases
-Master Journal List: search the master database of all the journal titles
-ResearcherID: find collaborators, review publication lists
Under the folder of Clinical trials:
-DeReG : German Somatic Gene Transfer Clinical Trial Database
Under the folder of Chill-out:
-Trade secretes: a nature network blog by bioentrepreneur
-Highlycited: Most highly influential scientists and scholars worldwide
Under the section of Personalized Cancer Medicine
Under the folder of Associations and Databases:
-European Society of Pharmacogenomics and Theranostics

Under the folder of iii) a) SNP and Genome Variation:

-CaSNP database : abundant copy number alterations (CNAs) in cancer
Under the folder of b)Gene mutation, and associated databases:
-European Directory of DNA diagnostic Laboratories (EDDNAL)

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Conference up-date - personalized cancer medicine (please find them on the right side...!)

2007-07-02T05:35:00.000-07:00

* (A)

Professional Stem cell Organizations, Networks and Consortia

Stem Cell Banks

Stem Cell Training Courses

United States Of America:

Training Courses in Wordlwide

Stem Cell Research Training Argentina
Stem Cells & Regenerative Medicine Summer school Greece
Stem-Cell Summer Workshop UK
Stem Cell Differentiation Training Course Italy

Cancer and Stem Cell Associated Resources and Platforms

Stem Cell General

Cancer Cell General

canSAR:an integrated cancer translational research and drug discovery resource

Rare Diseases

Genome Variation Alles Frequencies Worldwide (FINDbase)
Diseases Database
Diseases and Stem Cells
Rare-cancer
Specialized Search Engine For Rare Diseases

Cell Signaling Platforms

One –Stop Guide for Pathway Analysis

Kinase Phosphatase Resources
Kinase Resources

Phosphatase Resources

PhosphoSitePlus

Inhibitors

Epigenetics Resources

Chromatin Databases:

DNA Methylation Databases :

Networks:

Glycomics Platforms

Genomics Platforms

atabase For Cancer Gene Mutations

EGFR Mutation Database

Proteomics Platforms

Compendium of Targeted Proteomics Assays

Molecular Modeling and BioInformatics Platforms

Nanomedicine Platforms

Tissue Engineering and Regenerative Medicine

Model Organisms

Caenorhabditis elegans (nematode)

Caenorhabditis elegans WWW Server Papers, Meetings, Researchers, etc
Directory of Worm Base
Databases as well as Internet Resources About C. elegans
Trans-NIH C. elegans Initiative
Worm Protocols

Danio rerio (zebrafish)

Drosophila melanogaster (fruit fly)

Berkeley Drosophila Genome Project
Berkeley Drosophila Genome Project -Splice Site Prediction
Drosophila Genomics Resource Center (DGRC)
FlyBase Database of Sequence Data from the Drosophila Genome
High-throughput Analysis - Datas from Drosophila cell culture
Interactive Fly Genetic Glossary of Fruit Fly Biochemical Pathways and Organs
Trans-NIH Fly Initiative
Worldwide Drosophila Research Labs

Mus (Mouse)

Rattus(Rat)

Farm Animal Genomics Public Repositories for Genome Mapping Data
Xenbase
Model Organism Parameciumtetraurelia

General Platforms

Clinical Trials

Life Sciences Directory

Blogs

Discussion Forums

Literature Searches

Automated Literature Search Tool
Alternative interface to the PubMed
BioMed Central Online Databases
Cluster Med
CELLPEDIA: a repository for human cell information for cell studies anddifferentiation analyses
Entrez
Expert Essays: find in-depth, explanatory information relating to citation databases
eTBLAST
Gopubmed
Medline Ranker
Master Journal List: search the master database of all the journal titles
Pubget
ResearcherID: find collaborators, review publication lists
Scientific Literature Digital Library
Scitopia
Xploremed

Patent Searches

Grants and Scholarships

Symposium and Conferences

Self Learning

Chill out

Application of Cancer and Stem cell Resources

Personalized Cancer Medicine

ii) Cancer and Stem cell Pharmacology:

Cancer Stem Cell Research Database (Maven Semantic)
Chemonaut (lead-like screening compounds and building blocks)
Myriad for Healthcare Professional
Pharmacogenetics-Cell line Database

iii)
a) SNP and Genome Variation:

Catalogue of Structural Variation in the Human Genome
CaSNP (interrogating copy number alterations of cancer genome from SNP array data)
Candidate causal SNPs and their causal pathways
Functional SNP (F-SNP)
Genome Variation Server (GVS)
Mutalyzer 2.0 β-5 (to support checks of sequence variant nomenclature based on HGVS)
PolyPhen-2 (predicts possible impact of an amino acid substitution on the structure and function of a human protein)
PolyPhen Polymorphism Phenotyping
PupaSuite ( tool that allows for the selection of relevant SNPs within a gene)
SNP on NCBI
SNPs3D
SNPnexus Database
SNP Structural Modelling Tool
SNP effect (Molecular phenotyping of human SNPs and disease mutations)
SNP in Regulatory Gene Regions
SNAP (tools for designing sequence primers and evaluating RNA splicing effects)
SNP2PROT(to map human DNA variation onto proteins)
Variants GPS (Genotyping Data and Analysis, result from next generation sequencing)

b)Gene mutation, and associated databases:

ALlele FREquency Database
Atlas of Genetics and Cytogenetics in Oncology and Haematology
CGAP Genetic Annotation Initiative (GAI)
European Directory of DNA diagnostic Laboratories (EDDNAL)
Genetic Association Database
Genome Wide Association Database (GWAS DB)
GeneCards
HGBASE (Human Genic Bi-Allelic Sequences)
Human Gene Mutation Database (HGMD)
International HapMap Project
Immuno Polymorphism Database (IPD)
Mutation Discovery Database
Mammalian Gene Mutation Database (MGMD) (database of published mutagen-induced gene mutations in mammalian tissues)
Universal Mutation Database